- The Government Administrations which are responsible for drawing up Management Plans find it difficult to obtain reliable inventories of the agrifood by-products which have been generated; they are also faced with the challenge of establishing a coherent vision with regards possible synergies between these by-products and the geographic regions which make up the Basque Country.
- There has also arguably been a lack of foresight when implementing the infrastructures required for agrifood industry waste treatment and effluent etc.
- Low profitability and logistical difficulties when gathering waste which is produced in small amounts, waste which is highly seasonal, and waste which is widely dispersed in geographical terms.
- High transport costs, which makes it difficult to make a profit from selling the recovered products.
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